10XGenomics/loupeR

📋 What's Changed

• chore: Fix linting after lintr upgrade by @esiegel in https://github.com/10XGenomics/loupeR/pull/93
• feat: Allow filtering metadata columns by @esiegel in https://github.com/10XGenomics/loupeR/pull/92
• feat: Support `count_mat` as BPCells matrix by @ycli1995 in https://github.com/10XGenomics/loupeR/pull/91
• feat: Update barcode validation to permit loupe cellsegmentation barcodes by @esiegel in https://github.com/10XGenomics/loupeR/pull/103
• chore: bump v.1.1.5 by @esiegel in https://github.com/10XGenomics/loupeR/pull/104
• chore: fix release by @esiegel in https://github.com/10XGenomics/loupeR/pull/105

✨ New Contributors

• @ycli1995 made their first contribution in https://github.com/10XGenomics/loupeR/pull/91
• Full Changelog: https://github.com/10XGenomics/loupeR/compare/v1.1.4...v1.1.5

📋 What's Changed

• feat: Export the create_hdf5 function. by @esiegel in https://github.com/10XGenomics/loupeR/pull/83
• chore: bump v1.1.4 by @esiegel in https://github.com/10XGenomics/loupeR/pull/84
• Full Changelog: https://github.com/10XGenomics/loupeR/compare/v1.1.3...v1.1.4

📋 What's Changed

• 1.1.2 by @gmjoseph in https://github.com/10XGenomics/loupeR/pull/67
• Bump to version v1.1.2 by @gmjoseph in https://github.com/10XGenomics/loupeR/pull/68
• fix: Cast projections to double if need be by @esiegel in https://github.com/10XGenomics/loupeR/pull/70
• fix: Cast projections to double PartII by @esiegel in https://github.com/10XGenomics/loupeR/pull/71
• doc: Update count_mat docs by @esiegel in https://github.com/10XGenomics/loupeR/pull/73
• feat: Add non-interactive setup by @esiegel in https://github.com/10XGenomics/loupeR/pull/75
• fix: setup broken, extra comma by @esiegel in https://github.com/10XGenomics/loupeR/pull/76
• build: Add a GHA Linter by @esiegel in https://github.com/10XGenomics/loupeR/pull/79
• + 3 more

📋 Changes

• Update barcode prefix and suffix handling for better compatibility with Loupe.
• Update documentation.

📋 What's Changed

• Fix Version Comparison for Seurat Package by @andchamorro in https://github.com/10XGenomics/loupeR/pull/54

✨ New Contributors

• @andchamorro made their first contribution in https://github.com/10XGenomics/loupeR/pull/54
• Full Changelog: https://github.com/10XGenomics/loupeR/compare/v1.1.0...v1.1.1

📋 What's Changed

• filter bad clusters with missing/empty levels by @esiegel in https://github.com/10XGenomics/loupeR/pull/39
• Full Changelog: https://github.com/10XGenomics/loupeR/compare/v1.0.2...v1.1.0

📋 Changes

• require R version >= 4.0.0 (#34)
• Esacape shell args to allow paths with spaces. (#31)
• Add end-to-end test with mocked executable (#26)
• add more logs (#25)
• Add support for assays stored as SeuratObject::Assay5 (#23)
• fix potentially null OS metadata (#20)

📋 Changes

• Adds ability to pass ensemble ids via the optional `feature_ids` parameter
• various bugfixes