FreshAirTonight/af2complex
Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.
FreshAirTonight·1y ago·September 8, 2024Added some experimental options and improvements. For example, an option to pair MSA by top N per species or organism.
FreshAirTonight·3y ago·January 30, 2023Support AF-Multimer v3 multimer models released by DeepMind in AlphaFold version 2.3.0 More options for input feature generation
FreshAirTonight·3y ago·August 31, 2022📋 Changes
- Google Colab notebook access
- Added multiple MSA pairing options
- Enhanced interface score assessment
- Clustering predicted complexes
FreshAirTonight·4y ago·March 11, 2022Modified the example to demonstrate an application of the new AF-Multimer version 2 models.
FreshAirTonight·4y ago·March 9, 2022Minor bug fixes and code refactoring.
FreshAirTonight·4y ago·February 21, 2022Updated version supports both monomer and multimer neural network models of AlphaFold for predicting protein complex.
FreshAirTonight·4y ago·November 9, 2021First public release of AF2Complex. Predicting direct protein-protein interactions in multimeric proteins using AlphaFold neural network models. Developed and tested with AlphaFold v2.0.1.