ZJUFanLab/scCATCH

📋 Changes

• Update Gene symbols in CellMatch according to NCBI Gene symbols (updated in June. 30, 2021, https://www.ncbi.nlm.nih.gov/gene).
• __Allow users to use custom `cellmatch`__
• __Allow users to select different combination of tissues or cancers for annotation.__
• __Allow users to add more marker genes to `cellmatch` for annotation.__
• __Allow users to use markers from different species other than human and mouse.__
• __Allow users to use more methods to identify highly expressed genes.__

📋 Changes

• Update Gene symbols in CellMatch according to NCBI Gene symbols (updated in June 19, 2020, https://www.ncbi.nlm.nih.gov/gene). Unmatched marker genes FLJ42102, LOC101928100, LOC200772 and BC017158 are removed.
• Fix the `Error in intI(j, n = x@Dim[2], dn[[2]], give.dn = FALSE) : invalid character indexing` in `findmarkergenes` by adding a check of cluster number. Refer to [issue 14](https://github.com/ZJUFanLab/scCATCH/issues/14)
• Fix the `Error in object[object$cluster == clu.num[i], ] : wrong number of dimensions` in `scCATCH` by adding a check of type of input. Refer to [issue 13](https://github.com/ZJUFanLab/scCATCH/issues/13)
• Add a progress bar for `findmarkergenes` and `scCATCH`.

📋 Changes

• Add `cluster` and `match_CellMatch` parameters to handle large scRNA-seq datasets.
• Add `cancer` parameters to annotate scRNA-seq data from tissue with cancer.