mdshw5/simplesam
Simple pure Python SAM parser and objects for working with SAM records
13 Releases
Latest: 3mo ago
v0.1.4.2Latest
mdshw5·3mo ago·March 20, 2026**Full Changelog**: https://github.com/mdshw5/simplesam/compare/v0.1.4.1...v0.1.4.2
v0.1.4.1
mdshw5·4y ago·June 21, 2022📋 What's Changed
- Merge pull request #22 from mdshw5/develop by @mdshw5 in https://github.com/mdshw5/simplesam/pull/24
- Add pileup script and move tests to Github Actions by @mdshw5 in https://github.com/mdshw5/simplesam/pull/25
- Add description of pileup.py to README by @mdshw5 in https://github.com/mdshw5/simplesam/pull/26
- Full Changelog: https://github.com/mdshw5/simplesam/compare/v0.1.4.0...v0.1.4.1
v0.1.4.0
mdshw5·4y ago·June 29, 2021Add support for appending to existing SAM files (#21). (thanks @xizhihui )
v0.1.3.2
mdshw5·5y ago·May 22, 2021📋 Changes
- fixes an issue with StopIteration in a generator for python 3.7 (#20)
v0.1.3.1
mdshw5·6y ago·September 17, 2019📋 Changes
- Minor fix for `Sam.coords` documentation (#19)
v0.1.3
mdshw5·7y ago·October 5, 2018📋 Changes
- `Sam.tags` is now available immediately after object initialization. Previously `Sam.tags` evaluated as `None` unless a call had been made to `Sam.__get__` or `Sam.__set__`. (#16)
v0.1.2
mdshw5·8y ago·October 18, 2017📋 Changes
- Added better support for SAMv1.4+ CIGAR operations (thanks @bede)
- Added `Writer.close()` and `Reader.close()` methods (#12)
v0.1.1
mdshw5·8y ago·July 17, 2017First release containing documentation!
v0.0.5
mdshw5·9y ago·April 16, 2017📋 Changes
- Adds ability to define samtools path (closes #11)
v0.0.4Pre-release
mdshw5·10y ago·June 7, 2016Remove argparse requirement.
v0.0.3Pre-release
mdshw5·10y ago·April 15, 2016Improve performance when reading from BAM files.
v0.0.2
mdshw5·10y ago·August 3, 2015📋 Changes
- fixed subsampling generator method for `Reader`. (#4)
v0.0.1
mdshw5·11y ago·May 20, 2015This is the initial release, and while it works well is pretty much untested. Any contributions are welcome!