Nextflow Collection

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“A DSL for data-driven computational pipelines”

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“RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.”

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“A curated list of nextflow based pipelines”

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“Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing”

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“A flexible pipeline for complete analysis of bacterial genomes”

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“Repository to host tool-specific module files for the Nextflow DSL2 community!”

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“A curated collection of Nextflow implementation patterns”

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“Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection”

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“Python package with helper tools for the nf-core community.”

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“Assembly and binning of metagenomes”

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“GCP for Bioinformatics Researchers”

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“FlowCraft: a component-based pipeline composer for omics analysis using Nextflow. :whale::package:”

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“Amplicon sequencing analysis workflow using DADA2 and QIIME2”

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“Nextflow training material ”

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“Lint, format and auto-fix your Groovy / Jenkinsfile / Gradle files using command line”

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“ChIP-seq peak-calling, QC and differential analysis pipeline.”

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“Nanopore demultiplexing, QC and alignment pipeline”

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“ATAC-seq peak-calling and QC analysis pipeline”