Nextflow Collection
Repositories tagged with "nextflow"
Repositories tagged with "nextflow"
nextflow
nextflow-io
โA DSL for data-driven computational pipelinesโ
rnaseq
nf-core
โRNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.โ
awesome-nextflow
nextflow-io
โA curated list of nextflow based pipelinesโ
sarek
nf-core
โAnalysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencingโ
bactopia
bactopia
โA flexible pipeline for complete analysis of bacterial genomesโ
modules
nf-core
โRepository to host tool-specific module files for the Nextflow DSL2 community!โ
patterns
nextflow-io
โA curated collection of Nextflow implementation patternsโ
scrnaseq
nf-core
โSingle-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detectionโ
tools
nf-core
โPython package with helper tools for the nf-core community.โ
mag
nf-core
โAssembly and binning of metagenomesโ
gcp-for-bioinformatics
lynnlangit
โGCP for Bioinformatics Researchersโ
flowcraft
assemblerflow
โFlowCraft: a component-based pipeline composer for omics analysis using Nextflow. :whale::package:โ
ampliseq
nf-core
โAmplicon sequencing analysis workflow using DADA2 and QIIME2โ
training
nextflow-io
โNextflow training material โ
npm-groovy-lint
nvuillam
โLint, format and auto-fix your Groovy / Jenkinsfile / Gradle files using command lineโ
chipseq
nf-core
โChIP-seq peak-calling, QC and differential analysis pipeline.โ
nanoseq
nf-core
โNanopore demultiplexing, QC and alignment pipelineโ
atacseq
nf-core
โATAC-seq peak-calling and QC analysis pipelineโ