Ngs Collection
Repositories tagged with "ngs"
Repositories tagged with "ngs"
deepvariant
โDeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.โ
fastp
OpenGene
โAn ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)โ
gatk
broadinstitute
โOfficial code repository for GATK versions 4 and upโ
galaxy
galaxyproject
โData intensive science for everyone.โ
htslib
samtools
โC library for high-throughput sequencing data formatsโ
pysam
pysam-developers
โPysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.โ
deepTools
deeptools
โTools to process and analyze deep sequencing data.โ
jvarkit
lindenb
โJava utilities for Bioinformaticsโ
awesome-omics
flowhub-team
โA collection of awesome things regarding all omics.โ
juicer
aidenlab
โA One-Click System for Analyzing Loop-Resolution Hi-C Experimentsโ
snakepipes
maxplanck-ie
โCustomizable workflows based on snakemake and python for the analysis of NGS dataโ
bioconvert
bioconvert
โBioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.โ
fgbio
fulcrumgenomics
โTools for working with genomic and high throughput sequencing data.โ
training-material
galaxyproject
โA collection of Galaxy-related training materialโ
htsjdk
samtools
โA Java API for high-throughput sequencing data (HTS) formats.โ
AnnotSV
lgmgeo
โAnnotation and Ranking of Structural Variationโ
sortmerna
sortmerna
โSortMeRNA: next-generation sequence filtering and alignment toolโ
ugene
ugeneunipro
โUGENE is free open-source cross-platform bioinformatics softwareโ