Protein Folding Collection

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“To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released”

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“Bio-Computing Platform Featuring Large-Scale Representation Learning and Multi-Task Deep Learning “螺旋桨”生物计算工具集”

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“Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design”

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“Optimizing AlphaFold Training and Inference on GPU Clusters”

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“Implementation of the Equiformer, SE3/E3 equivariant attention network that reaches new SOTA, and adopted for use by EquiFold for protein folding”

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“IntelliFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction.”

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“Implementation of Invariant Point Attention, used for coordinate refinement in the structure module of Alphafold2, as a standalone Pytorch module”

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“Protein 3D structure prediction pipeline”

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“Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design”

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“🧬 ManyFold: An efficient and flexible library for training and validating protein folding models”

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“FrameDiPT: an SE(3) diffusion model for protein structure inpainting”