Rna Collection

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📦Normal

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“RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.”

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📦Normal

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“Protein Graph Library”

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💎Aqua

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“a JavaScript DNA, RNA, and protein sequence viewer”

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📦Normal

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“gRNAde is a Generative AI framework for inverse design of 3D RNA structure and function”

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💎Aqua

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“Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement”

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📦Normal

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“Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads”

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🔮Psychic

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“A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.”

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📦Normal

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“🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online”

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🐉Dragon

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“With RNArtist, you construct a collection of RNA structures that can be gathered into RNA families, projects,...”

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📦Normal

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“RNA-seq analysis pipeline for detection of gene-fusions”

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🔮Psychic

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“RiboNucleic Acid (RNA) Language Model”

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🔮Psychic

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“Identification of differential RNA modifications from nanopore direct RNA sequencing”

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⚙️Steel

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“A high-performance, pure Rust toolkit for standardizing and preparing biomolecular systems (proteins & nucleic acids). It heals missing atoms, resolves protonation states, adds solvation, and unifies topologies to forge simulation-ready structures.”

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🔥Flame

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“:microscope::books: Galaxy Tool wrappers”

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📦Normal

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“A comprehensive cancer DNA/RNA analysis and reporting pipeline”

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⚙️Steel

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“nucleic acid folding”

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📦Normal

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“RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.”

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🔮Psychic

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“Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24”