Repositories tagged with "bam"
htslib
samtools
โC library for high-throughput sequencing data formatsโ
sambamba
biod
โTools for working with SAM/BAM dataโ
htsjdk
โA Java API for high-throughput sequencing data (HTS) formats.โ
bioSyntax
โSyntax highlighting for computational biologyโ
rasusa
mbhall88
โRandomly subsample sequencing reads or alignmentsโ
Win10
kacos2000
โWin 10/11 related researchโ
dashbuilder
โDashboard composition tooling based on the Uberfire frameworkโ
viral-ngs
broadinstitute
โviral-ngs: command line tools and wrappers for processing raw viral genomic dataโ
genozip
divonlan
โA modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster tooโ
gtz
Genetalks
โA high performance and compression ratio compressor for genomic data, powered by GTXLab of Genetalks. โ
alignoth
โCreating alignment plots from bam filesโ
learning_bam_file
davetang
โLearning the Sequence Alignment/Map formatโ
VerifyBamID
Griffan
โVerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.โ
cljam
chrovis
โA DNA Sequence Alignment/Map (SAM) library for Clojureโ
dev-standards
bamlab
โhttps://bamtech.gitbooks.io/dev-standards/โ
bamtocov
telatin
โ๐ coverage extraction from BAM/CRAM files, supporting targets ๐ ย โ
simplesam
mdshw5
โSimple pure Python SAM parser and objects for working with SAM recordsโ
fuc
sbslee
โFrequently used commands in bioinformaticsโ