Genomics Collection
Repositories tagged with "genomics"
EPIC
⭐26.8kHP
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🔮Psychic
★★★★
scientific-agent-skills
K-Dense-AI
Pythonagent-skillsai-scientist
“Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 160,000+ scientists worldwide. 140 ready-to-use skills plus 100+ scientific databases covering biology, chemistry, medicine, and drug discovery. Compatible with Cursor, Claude Code, Codex, Antigravity, and the open Agent Skills standard.”
26.8k
2.8k
26.8k
GitPedia Card721/004
RARE
⭐5.1kHP
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🔮Psychic
★★★
biopython
biopython
Pythonbioinformaticsbiopython
“Official git repository for Biopython (originally converted from CVS)”
5.1k
1.9k
5.1k
GitPedia Card693/003
UNCOMMON
⭐3.7kHP
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🔮Psychic
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deepvariant
Pythonbioinformaticsdeep-learning
“DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.”
3.7k
788
3.7k
GitPedia Card157/002
UNCOMMON
⭐2.2kHP
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⚔️Fighting
★★
minimap2
lh3
Cbioinformaticsgenomics
“A versatile pairwise aligner for genomic and spliced nucleotide sequences”
2.2k
464
2.2k
GitPedia Card192/002
UNCOMMON
⭐2.0kHP
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⚡Thunder
★★
gatk
broadinstitute
Javabioinformaticsdna
“Official code repository for GATK versions 4 and up”
2.0k
628
2.0k
GitPedia Card288/002
UNCOMMON
⭐1.8kHP
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🔮Psychic
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galaxy
galaxyproject
Pythonbioinformaticsdna
“Data intensive science for everyone.”
1.8k
1.2k
1.8k
GitPedia Card304/002
UNCOMMON
⭐1.7kHP
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⚔️Fighting
★★
bwa
lh3
Cbioinformaticsfm-index
“Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)”
1.7k
575
1.7k
GitPedia Card269/002
UNCOMMON
⭐1.3kHP
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🔥Fire
★★
vg
vgteam
C++dnagenome-graph
“tools for working with genome variation graphs”
1.3k
217
1.3k
GitPedia Card553/002
UNCOMMON
⭐1.3kHP
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🔥Flame
★★
deep-review
greenelab
HTMLdeep-learninggenomics
“A collaboratively written review paper on deep learning, genomics, and precision medicine”
1.3k
271
1.3k
GitPedia Card491/002
UNCOMMON
⭐1.1kHP
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🔮Psychic
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gget
pachterlab
Pythonalphafoldalphafold2
“🧬 gget enables efficient querying of genomic reference databases”
1.1k
85
1.1k
GitPedia Card338/002
UNCOMMON
⭐1.1kHP
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🔮Psychic
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pyCirclize
moshi4
Pythonbioinformaticschord-diagram
“Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)”
1.1k
62
1.1k
GitPedia Card411/002
UNCOMMON
⭐1.1kHP
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🔮Psychic
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ncbi-genome-download
kblin
Pythonbioinformaticsbiology
“Scripts to download genomes from the NCBI FTP servers”
1.1k
178
1.1k
GitPedia Card925/002
UNCOMMON
⭐1.1kHP
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🔮Psychic
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hail
hail-is
Pythonbioinformaticsgenetics
“Cloud-native genomic dataframes and batch computing”
1.1k
266
1.1k
GitPedia Card582/002
UNCOMMON
⭐1.1kHP
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🔥Fire
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adam
bigdatagenomics
Scalaavrobig-data
“ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.”
1.1k
313
1.1k
GitPedia Card087/002
UNCOMMON
⭐991HP
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📦Normal
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GWA_tutorial
MareesAT
bioinformaticsgenetics
“A comprehensive tutorial about GWAS and PRS”
991
344
991
GitPedia Card815/002
UNCOMMON
⭐926HP
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🔮Psychic
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medical-research-skills
aipoch
Pythonacademic-writingagent-skills
“Hundreds of agent skills for medical research, including protocol design, data analysis, evidence insights, and academic writing.”
926
57
926
GitPedia Card705/002
UNCOMMON
⭐914HP
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🔮Psychic
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jcvi
tanghaibao
Pythonallmapsassembly
“Python library to facilitate genome assembly, annotation, and comparative genomics”
914
200
914
GitPedia Card525/002
UNCOMMON
⭐894HP
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🔮Psychic
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ClawBio
ClawBio
Pythonai-agentsbioinformatics
“🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Built on OpenClaw.”
894
183
894
GitPedia Card163/002