Repositories tagged with "tcga"
maftools
PoisonAlien
โSummarize, Analyze and Visualize MAF files from TCGA or in-house studies.โ
TCGAbiolinks
BioinformaticsFMRP
โTCGAbiolinksโ
easyTCGA
ayueme
โ๐ฆRๅ ๏ผMake TCGA download and prepare easy!โ
tcga_segmentation
MarvinLer
โWhole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024โ
pancancer
greenelab
โBuilding classifiers using cancer transcriptomes across 33 different cancer-typesโ
UCSCXenaTools
ropensci
โ:package: An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.org/web/packages/UCSCXenaTools/โ
cognoma
โPutting machine learning in the hands of cancer biologistsโ
Pipeline-Processing-TCGA-Slides-for-MIL
liupei101
โThis repo provides the pipeline of processing TCGA whole-slide images for downstream pathology analysis.โ
GenomicDataCommons
Bioconductor
โProvide R access to the NCI Genomic Data Commons portal.โ
MultiAssayExperiment
waldronlab
โBioconductor package for management of multi-assay dataโ
BioBombe
โBioBombe: Sequentially compressed gene expression features enhances biological signaturesโ
pathway-mapper
iVis-at-Bilkent
โPathwayMapper: An interactive and collaborative graphical curation tool for cancer pathwaysโ
